Approaches for "in silico" finishing of microbial genome sequences



Título del documento: Approaches for "in silico" finishing of microbial genome sequences
Revue: Genetics and molecular biology
Base de datos: PERIÓDICA
Número de sistema: 000410341
ISSN: 1415-4757
Autores: 1
1
1
Instituciones: 1Universidade Federal de Pelotas, Centro de Desenvolvimento Tecnologico, Pelotas, Rio Grande do Sul. Brasil
Año:
Periodo: Sep
Volumen: 40
Número: 3
Paginación: 553-576
País: Brasil
Idioma: Inglés
Tipo de documento: Revisión bibliográfica
Enfoque: Analítico
Resumen en inglés The introduction of next-generation sequencing (NGS) had a significant effect on the availability of genomic information, leading to an increase in the number of sequenced genomes from a large spectrum of organisms. Unfortunately, due to the limitations implied by the short-read sequencing platforms, most of these newly sequenced genomes remained as “drafts”, incomplete representations of the whole genetic content. The previous genome sequencing studies indicated that finishing a genome sequenced by NGS, even bacteria, may require additional sequencing to fill the gaps, making the entire process very expensive. As such, several in silico approaches have been developed to optimize the genome assemblies and facilitate the finishing process. The present review aims to explore some free (open source, in many cases) tools that are available to facilitate genome finishing
Disciplinas: Biología,
Medicina
Palabras clave: Genética,
Biología molecular,
Genómica,
Secuencia génica,
Nuevas tecnologías
Keyword: Biology,
Medicine,
Genetics,
Molecular biology,
Genomics,
Gene sequence,
New technologies
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