Determination of optimal number of independent components in yield traits in rice



Título del documento: Determination of optimal number of independent components in yield traits in rice
Revista: Scientia Agricola
Base de datos: PERIÓDICA
Número de sistema: 000455420
ISSN: 0103-9016
Autores: 1
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1
2
3
1
Instituciones: 1Universidade Federal de Vicosa, Departamento de Estatistica, Vicosa, Minas Gerais. Brasil
2Universidade Federal de Vicosa, Departamento de Zootecnia, Vicosa, Minas Gerais. Brasil
3Universidade Federal de Vicosa, Departamento de Engenharia Florestal, Vicosa, Minas Gerais. Brasil
Año:
Volumen: 79
Número: 6
País: Brasil
Idioma: Inglés
Tipo de documento: Artículo
Enfoque: Experimental, analítico
Resumen en inglés The principal component regression (PCR) and the independent component regression (ICR) are dimensionality reduction methods and extremely important in genomic prediction. These methods require the choice of the number of components to be inserted into the model. For PCR, there are formal criteria; however, for ICR, the adopted criterion chooses the number of independent components (ICs) associated to greater accuracy and requires high computational time. In this study, seven criteria based on the number of principal components (PCs) and methods of variable selection to guide this choice in ICR are proposed and evaluated in simulated and real data. For both datasets, the most efficient criterion and that drastically reduced computational time determined that the number of ICs should be equal to the number of PCs to reach a higher accuracy value. In addition, the criteria did not recover the simulated heritability and generated biased genomic values
Disciplinas: Agrociencias
Palabras clave: Gramíneas,
Fitotecnia,
Arroz,
Oryza sativa,
Genoma,
Mejoramiento genético
Keyword: Crop husbandry,
Gramineae,
Rice,
Oryza sativa,
Genome,
Plant breeding
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