Deep sequencing of small RNAs reveals the repertoire of miRNAs and piRNAs in Biomphalaria glabrata



Document title: Deep sequencing of small RNAs reveals the repertoire of miRNAs and piRNAs in Biomphalaria glabrata
Journal: Memorias do Instituto Oswaldo Cruz
Database: PERIÓDICA
System number: 000437110
ISSN: 0074-0276
Authors: 1
2
3
1
2
4
1
5
2
Institutions: 1Fundacao Oswaldo Cruz, Instituto Rene Rachou, Belo Horizonte, Minas Gerais. Brasil
2Universidade Federal de Uberlandia, Laboratorio de Bioinformatica e Analises Moleculares, Patos de Minas, Minas Gerais. Brasil
3Universidade Federal de Ouro Preto, Escola de Farmacia, Ouro Preto, Minas Gerais. Brasil
4Fundacao Ezequiel Dias, Departamento de Pesquisas e Desenvolvimento, Belo Horizonte, Minas Gerais. Brasil
5Universidade Federal de Uberlandia, Rede Multidisciplinar de Pesquisa, Ciencia e Tecnologia, Patos de Minas, Minas Gerais. Brasil
Year:
Volumen: 115
Country: Brasil
Language: Inglés
Document type: Artículo
Approach: Analítico, descriptivo
English abstract Biomphalaria glabrata snails are widely distributed in schistosomiasis endemic areas like America and Caribe, displaying high susceptibility to infection by Schistosoma mansoni. After the availability of B. glabrata genome and transcriptome data, studies focusing on genetic markers and small non-coding RNAs have become more relevant. The small RNAs have been considered important through their ability to finely regulate the gene expression in several organisms, thus controlling the functions like cell growth, metabolism, and susceptibility/resistance to infection. OBJECTIVE The present study aims on identification and characterisation of the repertoire of small non-coding RNAs in B. glabrata (Bgl-small RNAs). METHODS By using small RNA sequencing, bioinformatics tools and quantitative reverse transcription polymerase chain reaction (RT-qPCR), we identified, characterised, and validated the presence of small RNAs in B. glabrata. FINDINGS 89 mature miRNAs were identified and five of them were classified as Mollusk-specific. When compared to model organisms, sequences of B. glabrata miRNAs showed a high degree of conservation. In addition, several target genes were predicted for all the mature miRNAs identified. Furthermore, piRNAs were identified in the genome of B. glabrata for the first time. The B. glabrata piRNAs showed strong conservation of uridine as first nucleotide at 5’ end, besides adenine at 10th position. Our results showed that B. glabrata has diverse repertoire of circulating ncRNAs, several which might be involved in mollusk susceptibility to infection, due to their potential roles in the regulation of S. mansoni development. MAIN CONCLUSIONS Further studies are necessary in order to confirm the role of the Bgl-small RNAs in the parasite/host relationship thus opening new perspectives on interference of small RNAs in the organism development and susceptibility to infection
Disciplines: Biología,
Medicina
Keyword: Moluscos,
Genética,
Salud pública,
Esquistosomiasis,
Vectores biológicos,
ARN no codificante,
Secuenciamiento de próxima generación,
Biomphalaria glabrata
Keyword: Molluscs,
Genetics,
Public health,
Schistosomiasis,
Biological vectors,
Non-coding RNA,
Next Generation Sequencing (NGS),
Biomphalaria glabrata
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