Phylogenetic tree calculations using the Grid with DAG workflow job



Document title: Phylogenetic tree calculations using the Grid with DAG workflow job
Journal: RET. Revista de estudios transdisciplinarios
Database: PERIÓDICA
System number: 000357028
ISSN: 1856-9161
Authors: 1
2
3
3
Institutions: 1Instituto de Estudios Avanzados, Caracas, Distrito Federal. Venezuela
2Parque Tecnológico Mérida, Masini, Mérida. Venezuela
3Centro de Investigaciones Energéticas, Medioambientales y Tecnológicas, Madrid. España
Year:
Season: Jul-Dic
Volumen: 1
Number: 2
Pages: 25-30
Country: Venezuela
Language: Inglés
Document type: Artículo
Approach: Experimental, aplicado
English abstract The goal of the work is to implement molecular phylogenetic calculations using the Grid paradigm by means of the MrBayes software using Directed Acyclic Graphs (DAG) jobs. In this method, a set of jobs depends on the input or the output of other jobs. Once the runs have been successfully done, all the results can be collected by a specific Perl script inside the defined DAG job. For testing this methodology, we calculate the evolution of papillomavirus with 121 sequences
Disciplines: Biología,
Ciencias de la computación
Keyword: Procesamiento de datos,
Filogenia,
Filogenia molecular,
Gráficas
Keyword: Biology,
Computer science,
Data processing,
Phylogeny,
Molecular phylogeny,
Graphs
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